Software and Support material
This site contains pieces of software and other supporting material.

Publications

  • Adaptation to Survival in Germinal Center is the Initial Step in Onset of Indolent Stage of Multiple Myeloma
    • Article at Molecular Pharmaceutics (in press, 2011).
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    • Simulation files
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  • Evolution of tumor invasiveness: the adaptive tumor microenvironment landscape model
    • Article at Cancer Research (2011).
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    • Simulation files
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  • A Multiscale model of the bone marrow and hematopoiesis
    • Article at MBE (2011).
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    • Instructions for playing videos
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    • Simulation video 1
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    • Simulation video 2
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    • Simulation video 3
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    • Simulation video 4
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    • Simulation video 5
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    • Source code
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    • Raw data from simulations
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    • File with initial configuration for simulation
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    • Batch command file for simulation
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    • Parameter file for simulation
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    • Batch command file for generating report of simulation
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  • A Putative Role for Hypoxia in Development of De Novo Chemoresistance (2010)
    • Poster presented at AACR 2010
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  • Guidelines for detection of clonal immunoglobulin and T-cell receptor gene rearrangements in childhood acute lymphoblastic leukemia using a low-cost PCR strategy (2010)
    • Software used in article
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    • Article at Pediatric Blood and Cancer


  • A Quantitative Theoretical Model for Development of Resistance in Solid Tumors (2010)
    • Poster Presented Workshop for Young Researchers in Mathematical Biology 2009
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    • Article at Biology Direct


  • A Quantitative Theoretical Model for Development of Malignancy in Ductal Carcinoma In Situ (2010)
    • Poster Presented in ICSB 2007
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    • Article at Journal of Theoretical biology
    • Package with software and example files. User guide in progress.


  • Adaptive Therapy (2009)
    • Full text in Cancer Research
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  • The Potential Role of Systemic Buffers in Reducing Intratumoral pHe and Acid Mediated Invasion (2009)
    • Full text in Cancer Research
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    • Poster presented at Moffitt Scientific Retreat 2009
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  • PhD Thesis: A computational approach for simulation of biological processes: tridimensional simulation of tumor metabolism and development (2008)
    • Download
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  • Conservation of glycolytic oscillations in Saccharomyces cerevisiae and human pancreatic β-cells: A study of metabolic robustness (2006)
    • Abstract
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    • SBML Diagrams
    • Jarnac Scripts
    • Matlab's Simulink Files


  • TSim, a platform for simulation of multi-cellular systems (2006)
    • Abstract
    • Poster
    • Home Page
    • User Guide
    • Example Files


  • Study of early tumour development and its metabolic properties (2006)
    • Abstract
    • Poster
    • TSim Example Files


  • Study of dependence of synchronization of Beta-cell islands on size of clusters (2006)
    • Abstract
    • Poster
    • TSim Example Files



Visit my blog

http://i-genics.blogspot.com/

Discussion groups

  • Discussion Group for MSc and Phd Students of Unicamp Genetics Department and Boldrini Medical Center genboluni.

Memberships